arise-metabarcoding-biodiversity

Analyzing Illumina NovaSeq data using dada2

This repository contains code and documentation for performing dada2 analyses on Illumina NovaSeq data on Naturalis’s high-performance computing infrastructure. The repository is laid out following the guidelines of Noble, 2009. The contents are made available under an MIT open source license. The following subsections are here:

• Documentation about configuring the infrastructure, adding users, installing software, and staging the code in this repository.
• Source code with additional scripts for the pipeline.
• Intermediate and result data
• Resulting plots and outputs

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